query-f02fc99f571644245cebbb2632ae923a
Get GO Annotations for FA genes SELECT ?hgnc ?protein ?go ?goLabel ?goId WHERE { values ?hgnc {"FANCA" "FANCB" "FANCC" "FANCE" "FANCF" "FANCG" "FANCL" "FANCM" "FANCD2" "FANCI" "UBE2T" "BRCA2" "BRIP1" "PALB2" "RAD51C" "SLX4" "ERCC4" "RAD51" "BRCA1" "MAD2L2" "XRCC2" "RFWD3"} ?gene wdt:P353 ?hgnc . # get gene items with these HGNC symbols ?gene wdt:P688 ?protein . # get the protein ?protein wdt:P680|wdt:P681|wdt:P682 ?go . # get GO terms ?go wdt:P686 ?goId SERVICE wikibase:label { bd:serviceParam wikibase:language "en" } }
Use at
- https://query.wikidata.org/sparql
PREFIX wikibase: <http://wikiba.se/ontology#>
PREFIX wdt: <http://www.wikidata.org/prop/direct/>
PREFIX bd: <http://www.bigdata.com/rdf#>
#Get GO Annotations for FA genes
SELECT ?hgnc ?protein ?go ?goLabel ?goId WHERE {
values ?hgnc {"FANCA" "FANCB" "FANCC" "FANCE" "FANCF" "FANCG" "FANCL" "FANCM" "FANCD2" "FANCI" "UBE2T" "BRCA2" "BRIP1" "PALB2" "RAD51C" "SLX4" "ERCC4" "RAD51" "BRCA1" "MAD2L2" "XRCC2" "RFWD3"}
?gene wdt:P353 ?hgnc . # get gene items with these HGNC symbols
?gene wdt:P688 ?protein . # get the protein
?protein wdt:P680|wdt:P681|wdt:P682 ?go . # get GO terms
?go wdt:P686 ?goId
SERVICE wikibase:label { bd:serviceParam wikibase:language "en" }
}
Query found at
graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
v2("?gene")
v4("?go"):::projected
v5("?goId"):::projected
v1("?hgnc"):::projected
v3("?protein"):::projected
c8(["bd:serviceParam"]):::iri
c10(["en"]):::literal
bind0[/VALUES ?hgnc/]
bind0-->v1
bind00(["FANCA"])
bind00 --> bind0
bind01(["FANCB"])
bind01 --> bind0
bind02(["FANCC"])
bind02 --> bind0
bind03(["FANCE"])
bind03 --> bind0
bind04(["FANCF"])
bind04 --> bind0
bind05(["FANCG"])
bind05 --> bind0
bind06(["FANCL"])
bind06 --> bind0
bind07(["FANCM"])
bind07 --> bind0
bind08(["FANCD2"])
bind08 --> bind0
bind09(["FANCI"])
bind09 --> bind0
bind010(["UBE2T"])
bind010 --> bind0
bind011(["BRCA2"])
bind011 --> bind0
bind012(["BRIP1"])
bind012 --> bind0
bind013(["PALB2"])
bind013 --> bind0
bind014(["RAD51C"])
bind014 --> bind0
bind015(["SLX4"])
bind015 --> bind0
bind016(["ERCC4"])
bind016 --> bind0
bind017(["RAD51"])
bind017 --> bind0
bind018(["BRCA1"])
bind018 --> bind0
bind019(["MAD2L2"])
bind019 --> bind0
bind020(["XRCC2"])
bind020 --> bind0
bind021(["RFWD3"])
bind021 --> bind0
v2 --"wdt:P353"--> v1
v2 --"wdt:P688"--> v3
subgraph union0[" Union "]
subgraph union0l[" "]
style union0l fill:#abf,stroke-dasharray: 3 3;
subgraph union1[" Union "]
subgraph union1l[" "]
style union1l fill:#abf,stroke-dasharray: 3 3;
v3 --"wdt:P682"--> v4
end
subgraph union1r[" "]
style union1r fill:#abf,stroke-dasharray: 3 3;
v3 --"wdt:P681"--> v4
end
union1r <== or ==> union1l
end
end
subgraph union0r[" "]
style union0r fill:#abf,stroke-dasharray: 3 3;
v3 --"wdt:P680"--> v4
end
union0r <== or ==> union0l
end
v4 --"wdt:P686"--> v5
subgraph s1["http://wikiba.se/ontology#label"]
style s1 stroke-width:4px;
c8 --"wikibase:language"--> c10
end